Differentiation of Induced Pluripotent Stem Cells (iPSCs) into Dopaminergic Neurons

 

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Differentiating iPSCs into midbrain dopaminergic neurons offers incredible potential for researching neurological conditions, particularly Parkinson's disease. Whether you are investigating dopamine signaling pathways or modeling neurodegenerative diseases in vitro, this protocol outlines a clear, step-by-step method to efficiently drive your stem cells toward a dopaminergic fate. You will find it straightforward to follow, helping you achieve high-quality, functional neuronal cultures for all your downstream assays!

Featured Key Products

Neuronal Induction

LDN193189 hydrochloride (LDN)

Potent, selective ALK2/ALK3 inhibitor which also promotes neural induction of hPSCs

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Neuronal Maturation

Recombinant BDNF

Member of the neurotrophin growth factor family. Plays an important role in synaptic plasticity.

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Neuronal Maturation

Recombinant human GDNF protein

GDNF is a key protein used to differentiate hPSC-derived neural progenitor cells into neurons

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Neuronal Differentiation

DAPT

γ-secretase inhibitor and classical notch inhibitor. Induces neuronal differentiation.

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Materials

  • Human iPSCs
  • E8-like media
  • Recombinant human Vitronectin
  • EDTA (HB5135)
  • Accutase
  • Basement membrane matrix
  • Ascorbic acid (HB1238)
  • Dibutyryl cyclic-AMP sodium salt
  • Knockout DMEM
  • DMEM / F12
  • Knockout Serum replacement
  • L-glutamine supplement (e.g. GlutaMax)
  • MEM NEAA
  • 2-Mercaptoethanol
  • LDN193189 (HB5624)
  • SB431542 (HB3555)
  • SAG (HB3107)
  • Purmorphamine (HB3412)
  • CHIR99021 (HB1261)
  • DNase I

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Media Recipes

Aseptically combine components and filter the media before use.

Media A - Day 1

Component Concentration
Knockout DMEM 85%
Knockout Serum replacement 15%
GlutaMax 1x
MEM Non-Essential Amino Acids 1x
2-Mercaptoethanol 10 mM
LDN193189 (HB5624) 100 nM
SB431542 (HB3555) 10 µM

Media B - Days 2 - 3

Component Concentration
Knockout DMEM 85%
Knockout Serum replacement 15%
GlutaMax 1x
MEM Non-Essential Amino Acids 1x
2-Mercaptoethanol 10 mM
LDN193189 (HB5624) 100 nM
SB431542 (HB3555) 10 µM
SAG (HB3107) 100 nM
Purmorphamine (HB3412) 2 µM
Human FGF-8a 100 ng/ml

Media C - Days 4 - 5

Component Concentration
Knockout DMEM 85%
Knockout Serum replacement 15%
GlutaMax 1x
MEM Non-Essential Amino Acids 1x
2-Mercaptoethanol 10 mM
LDN193189 (HB5624) 100 nM
SB431542 (HB3555) 10 µM
SAG (HB3107) 100 nM
Purmorphamine (HB3412) 2 µM
Human FGF-8a 100 ng/ml
CHIR99021 (HB1261) 3 µM

Media D - Days 6 - 7

Component Concentration
Knockout DMEM 63.2%
Knockout Serum replacement 11.6%
Neurobasal Medium 24.8%
N-2 supplement 0.13%
B-27 supplement 0.26%
GlutaMax 1x
MEM Non-Essential Amino Acids 1x
2-Mercaptoethanol 10 µM
LDN193189 (HB5624) 100 nM
CHIR99021 (HB1261) 3 µM
SAG (HB3107) 100 nM
Purmorphamine (HB3412) 2 µM
Human FGF-8a 100 ng/ml

Media E - Days 8 - 9

Component Concentration
Knockout DMEM 42.3%
Knockout Serum replacement 7.6%
Neurobasal Medium 49.3%
N-2 supplement 0.26%
B-27 supplement 0.5%
GlutaMax 1x
MEM Non-Essential Amino Acids 1x
2-Mercaptoethanol 10 µM
LDN193189 (HB5624) 100 nM
CHIR99021 (HB1261) 3 µM

Media F - Days 10 - 11

Component Concentration
Knockout DMEM 21%
Knockout Serum replacement 3.8%
Neurobasal Medium 74%
N-2 supplement 0.38%
B-27 supplement 0.74%
GlutaMax 1x
MEM Non-Essential Amino Acids 1x
2-Mercaptoethanol 10 µM
LDN193189 (HB5624) 100 nM
CHIR99021 (HB1261) 3 µM

Media G - Days 12 - 13

Component Concentration
Neurobasal Medium 96%
B-27 supplement 1x
GlutaMax 1x
DAPT (HB3345) 10 µM
Dibutyryl cyclic-AMP sodium salt 500 µM
Ascorbic acid (HB1238) 200 µM
CHIR99021 (HB1261) 3 µM
BDNF (HB3485) 20 ng/ml
GDNF (HB5735) 20 ng/ml
TGF-β3 1 ng/ml

Media H - Days 14 - 19, 21 - 35 (Maturation Media)

Component Concentration
Neurobasal Medium 96%
B-27 supplement 1x
GlutaMax 1x
DAPT (HB3345) 10 µM
Dibutyryl cyclic-AMP sodium salt 500 µM
Ascorbic acid (HB1238) 200 µM
BDNF (HB3485) 20 ng/ml
GDNF (HB5735) 20 ng/ml
TGF-β3 1 ng/ml

Media I - Day 20 (Seeding Media) 

Component Concentration
Neurobasal Medium 96%
B-27 supplement 1x
GlutaMax 1x
DAPT (HB3345) 10 µM
Dibutyryl cyclic-AMP sodium salt 500 µM
Ascorbic acid (HB1238) 200 µM
BDNF (HB3485) 20 ng/ml
GDNF (HB5735) 20 ng/ml
TGF-β3 1 ng/ml
ROCK inhibitor Y-27632 (HB2297) 10 µM

Protocol

1
Cell culture and maintenance: Cultivate human iPSCs using E8 medium on 6-well plates coated with 5 µg/ml Vitronectin. Every 3 to 4 days, perform passaging with 0.5 µM EDTA (HB5135) and split the cells at a 1:6 ratio to ensure they remain high quality prior to differentiation.
2
Preparation for differentiation: Once the iPSCs have reached the required quality and confluence, detach them using Accutase. Seed the cells into a 24-well plate previously coated with basement membrane matrix at a density of 3.8x105 cells/ml. Incubate until a 90-100% confluent monolayer is established.
3
Neural induction (Day 1): Initiate differentiation toward neural progenitor cells (NPCs) by applying dual SMAD inhibition. Exchange media for Media A which encorporates SB431542 (HB3555) to suppress pluripotency maintenance pathways and guide the cells toward a neural lineage.
4
Neural Induction (Days 2 - 3): Exchange the culture medium with freshly prepared Media B
5
Neural Induction (Days 4 - 6): Exchange the culture medium with freshly prepared Media C
6
Neural Induction (Days 6 - 7): Exchange the culture medium with freshly prepared Media D
7
Neural Induction (Days 8 - 9): Exchange the culture medium with freshly prepared Media E
8
Neural Induction (Days 8 - 9): Exchange the culture medium with freshly prepared Media E
9
Neural Induction (Days 10 - 11): Exchange the culture medium with freshly prepared Media F
10
Neural Induction (Days 12 - 13): Exchange the culture medium with freshly prepared Media G
11
Neuronal Maturation (Days 14 - 19): Exchange the culture medium with freshly prepared Media H (Maturation Media)
12
Passaging of Neuronal Progenitors (Day 20): Passage cells using a mixture of Accutase and Papain then wash and filter cells in DMEM/F12 containing DNase I. Subseqeuntly wash and filter cells a second time in DMEM/F12 without Dnase I. Next seed cells at a density of 8.6x105 cells / ml into a Geltrex-coated 24 plate well containing Media I (Seeding Media).
13
Neuronal Maturation (Days 21 - 35): Exchange the culture medium with freshly prepared Media H (Maturation Media). 
14
Phenotypic Analysis: Fix cells with 4% paraformaldehyde (PFA) then stain for dopaminergic markers such as tyrosine hydroxylase (TH). For a full guide to immunocytochemistry (ICC), please see our ICC protocol.

References

1
O Klein, M. et al. 2019. Dopamine: Functions, Signaling, and Association with Neurological Diseases. Cellular and Molecular Neurobiology. PMID: 30446950
2
Zhuang, Y. et al. 2021. Mechanism of dopamine binding and allosteric modulation of the human D1 dopamine receptor. Cell Research PMID: 33750903
3
Marcotto et al., 2026 Differentiation of human iPSCs into dopaminergic neurons: comparative analysis of 2D and 3D protocols for disease modeling and pharmacology.Neuroscience Applied PMID: 41756022